Plant MITE

SE2850599

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9604
Sorghum bicolor
SE2850599
PIF/harbinger
To2
chromosome_3:49152595-49153143
TTA
AGGCCTTGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT          -          TTT      -     CGACACCGTAGCACTTTC ----- -    ATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCAAACTGTGCAATTAGTTTTTATTTTTATCTATATTTAATACTTCATGCATGCGTCTAAAGATTCGATGTGATGGGGAATCTGAAAAGTTTTGCAAAATTTTTTGGGAACTAAGAGCATCCCCAACCGCTTTGCATAATTGGTTTGACAAATGAGA
  AGGCCTTGTT TAGTTCCAAA   TTTTGC AAAAT                  G     T TTGT                                                                                                                                                                                                                             
  |||||||||| ||||||||||   |||||| |||||                  |     | ||||                                                                                                                                                                                                                              
  TCCGGAACAA TCTCGTAGGG   GTTGGC AAACG                  T     C AAAC                                                                                                                                                                                                                             
AT          A          ---      A     ------------------ TTATT G    GTAAGTACATAAACGTTTTTTCAGAATTTTTGTGAATAGGTTGCCAAACCGTAAATCTGAAACGTTAAAACAATTGAACCGTTTTTCTCTCCTTCCTAACCGTATATACGGTTTGGACAAGTGTGAACCGTAACCTTTTAACCGCGCTTCACTAATTACGGTCTGGTAACCTCTAACAGAGAAAAGTGGAAACGGTATAATAAAACTCTGAACCGTTTGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850599

TTAGGCCTTGTTTAGTTCCAAATTTTTTTGCAAAATCGACACCGTAGCACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACCAAACTGTGCAATTAGTTTTTATTTTTATCTATATTTAATACTTCATGCATGCGTCTAAAGATTCGATGTGATGGGGAATCTGAAAAGTTTTGCAAAATTTTTTGGGAACTAAGAGCATCCCCAACCGCTTTGCATAATTGGTTTGACAAATGAGAGAGTTTGCCAAGTCTCAAAATAATATGGCAAAGGTGAAAAGAGACAATCTCCAATGGTCTGGCATTAATCACTTCGCGCCAATTTTCCAATGCCAAGTGTGAACAGGTTTGGCATATATGCCAATCCTTCCTCTCTTTTTGCCAAGTTAACAAAATTGCAAAGTCTAAATGCCAAACCGTTGGATAAGTGTTTTTAAGACTTTTTTGCAAATACATGAATGCAAAGCTTATTTGCAAAACGGTTGGGGATGCTCTAAACAAGGCCTTA

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