SE2850600

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9605
  • Sorghum bicolor
  • SE2850600
  • PIF/harbinger
  • To1
  • chromosome_1:11501174-11501422
  • TTA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C           ACACCCAAAAACCCAAAACTTTACA      CCCGTCACATCGAATCTCGTGGCACATGTATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTGTCTGTAAATCGCG
  AGG CTTGTTTAGAT                         AGATTC                                                                                         
  ||| |||||||||||                         ||||||                                                                                          
  TCC GAACAAATCTA                         CGTTTT                                                                                         
AT   C           -------------------------      TAAAAAACCTAAAACTGTGACATTGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAATTTTCTAAGCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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