SE2850604

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9609
  • Sorghum bicolor
  • SE2850604
  • PIF/harbinger
  • To1
  • chromosome_2:76403885-76404368
  • TAA
  • AGGCCTTGTTTAGTTTCGAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA             TTT        GAAAACT   C            C        GTTTG           A            C        A                           C               T  TTTA    C                              A                          A   C    T      CA     -AA     GCC
  AGGCCTTGTTTAG   CGAAAAGT       TTT GGTACTGTAGCA TTTCGTTT     TGACAAATATT TCTAATTATGGA TAACTAGG TTAAAAGATTCGTCTCGTGATTTACAG TAAACTGTGTAATTA TT    TTTT GTCTATATTTAGTGCTTCATGCATGTGCCG AAGATTCGATGTGACGGGGAATCTTG AAA TTTT GGTTTT  GGGTG   CTAAG   
  |||||||||||||   ||||||||       ||| |||||||||||| ||||||||     ||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||  |||||   |||||    
  TCCGGAACAAATC   GTTTTTCA       AAA CTGTGGCATCGT AAAGCAAA     ACTGTTTGTAA AGATTAATACCT ATTGATCC AATTTTCTAAGCAGAGCACTAAATGTC ATTTGACACGTTAAT AA    AAAA TAGATATAAATTATGAAGTACGTACACGGC TTCTAAGCTACACTGCCTCTTAGAAC TTT AAAA CCAAAA  CCCAT   GATTT   
AA             TAC        AAAACCT   A            A        AATAA           C            C        G                           C               C  TAAG    A                              G                          A   C    C      -A     ATA     GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End