SE2850605

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9610
  • Sorghum bicolor
  • SE2850605
  • PIF/harbinger
  • To1
  • super_14:1143805-1144042
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G           GGGTTTTG    CTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATAGAGTAAATAGGCTCAAAAGATTCATCTCACAAATTAC
  AGGCCTTGTTTAGTT GCAAAAATTTT        GCTA                                                                                 
  ||||||||||||||| |||||||||||        ||||                                                                                 A
  TCCGGAACAAATCAA CGTTTTTAAAA        TTCT                                                                                 
AA               G           -------G    AAGGGGCAGTGTAGCTTAGAAACCAGCGTACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTGACGTGTCAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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