Plant MITE

SE2850608

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9613
Sorghum bicolor
SE2850608
PIF/harbinger
To73
chromosome_10:49473774-49474070
TAA
AGACTATCTCCAACA

Secondary structure and sequence

TSD TIR

5'

3'

TA  A            AT   C       AT  -  GACCCATTTGTCCTTTGGGTAGCGCTACAGGTAAAAGGTTCCATACCTATTTTTAGTCTTCTCCAACAACAAGACCTAAAAGACAACACTCTCTGCAAATGGGTCTCGAGGAGA
  AG CTATCTCCAACA  CGT ACCCAAA  AC AA                                                                                                                  
  || ||||||||||||  ||| |||||||  || ||                                                                                                                   
  TC GATAGAGGTTGT  CCT CTGGGTA  AA CC                                                                                                                  
AA  C            -C   -       --  C  TTGGGTTTGGATTTTACCCAGAGGTTGTGTTATGGATATCGGAGGTTGTCTCATGGGTATGTCTTCTGGATAAAACCCATAGTCCTCTCCGTATTGGGTTTAAACCCATAGGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850608

TAAGACTATCTCCAACAATCGTCACCCAAAATACAAGACCCATTTGTCCTTTGGGTAGCGCTACAGGTAAAAGGTTCCATACCTATTTTTAGTCTTCTCCAACAACAAGACCTAAAAGACAACACTCTCTGCAAATGGGTCTCGAGGAGAGAGGATACCCAAATTTGGGTTATGCCTCTCCTGATACCCAAAATAGGTCTTCTGTATGGGTACTCTGTTGGAGGCTATAGGTATTGTGTTGGAGACCCATTTTAGGTTTGGGTTCCCAAATGGGTCTCCCTGTTGGAGATAGCCTAA

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