Plant MITE

SE2850613

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9618
Sorghum bicolor
SE2850613
PIF/harbinger
To14
chromosome_5:6091767-6092013
TTA
AGGCCTGTTTAGTTCCCAAAAATTTTTGTAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT      -     G    C   AA            -TTTTC      CCCGTCACATCGAATCTTGCAGCATATGCATGTAGCATTAAATATACATGAAAAACTAATTAATTACATAGTTTAC
  AGGCCT GTTTA TTCC AAA  TTTTTGTAAAAT      AGATTC                                                                            
  |||||| ||||| |||| |||  ||||||||||||      ||||||                                                                             
  TCCGGA CAAAT AAGG TTT  AAGAACGTTTTA      ACATCG                                                                            
AT      A     G    -   AA            CCTGTG      TAAAAGCAAACATAAACTGTTTATAATAAGTTAGTAACTGATTGATCCGAGTTTTCTAGGTAAAGTGTTTAATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850613

TTAGGCCTGTTTAGTTCCCAAAAATTTTTGTAAAATTTTTCAGATTCCCCGTCACATCGAATCTTGCAGCATATGCATGTAGCATTAAATATACATGAAAAACTAATTAATTACATAGTTTACCTGTAATTTGTGAAATGGATCTTTTGAGCCTAGTTAGTCAATGATTGAATAATATTTGTCAAATACAAACGAAAATGCTACAGTGTCCATTTTGCAAGAAAATTTGGAAGTAAACAAGGCCTTA

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