SE2850616

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9621
  • Sorghum bicolor
  • SE2850616
  • PIF/harbinger
  • To18
  • chromosome_1:5417385-5417632
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACCCAAAATTCAAAAACTTTTCAAGATTCCCC     ATCAAATCTTGTGGCACATGCATAAAGCACTAAATATAGAAGAAAACAAAAACTAATTACACATTTTGTCTATAATTTACGAGAC
  AGGCCTTGTTTAGTTC                                GTCAC                                                                                     
  ||||||||||||||||                                |||||                                                                                      
  TCCGGAACAAATCAAG                                GCTTT                                                                                     
AT                --------------------------------     TCTAAAGCCTAAAACCATTACATCATAAAAGCAAACAAACACTGTTTATAACAGGTTAGTATTTGATTAATCCGAGTTTTCTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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