SE2850617

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9622
  • Sorghum bicolor
  • SE2850617
  • PIF/harbinger
  • To3
  • chromosome_2:2058007-2058252
  • TAA
  • AGGCCTTGTTTAGTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G GA     -    ATTTT   ---- ACTGTAGCACTTTTATTTTTATTTAGCAATTATTGTCCAACTATGGACTAACTAGGCTCAAAAGATTTGTCTCTCAAATTACAG
  AGGCCTTGTTTAGTT A  AGATG GAAA     GGG    T                                                                                    
  ||||||||||||||| |  ||||| ||||     |||    |                                                                                     
  TCCGGAACAAATCAA T  GATTT GGGT     TTT    A                                                                                    
AA               G GG     T    -----   TGAA AGTTCTAAGGGACAGTGTAGATTAGAACGCCGTGTACGTACCTTGTAACTTATATCTATTTTTTATTAATTAACGTTTCAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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