SE2850622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9627
  • Sorghum bicolor
  • SE2850622
  • PIF/harbinger
  • To4
  • chromosome_10:53507003-53507240
  • TAA
  • AGGCCTTGTTTAGTTTGCAAAATTTTGGTTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -C        ---             CTGTAGCACTTTCGTTTTTATTTGGCAAACATTATCCAATCACGGAGTAACTAGACTCAAAAGATTCATCTCACAA
  AGGCCTTGTTTAGTTTG  AAAATTTT   GGTTTTTTGGCTA                                                                            
  |||||||||||||||||  ||||||||   |||||||||||||                                                                             
  TCCGGAACAAATCAAGC  TTTTAAAA   CTAAAGGACAGTG                                                                            
AA                 AT        GTT             TAGCTTAGAAACCAGCGTACGTACCTCGTAATTTATTTCTGTTTTTATTTTTGATTAATGTATCAAATAGACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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