SE2850624

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9629
  • Sorghum bicolor
  • SE2850624
  • PIF/harbinger
  • To2
  • chromosome_10:52662529-52662834
  • TCT
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
 T      GTGG G    GCACGTGATCGAATAGAAACGCCGGTTTCAAATTTCAAGCTAAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATGGACACTGTAGCTTTTTCGTTTGTATTTGATAAATATTGTCCAATCATGGACTAACTAGGCT
  CTGGCG    T GATC                                                                                                                                          
  ||||||    | ||||                                                                                                                                           
  TCCGGA    A CAAA                                                                                                                                          
AA      ---- -    TCAAGGATTTTTTAAAACGTTTTAAAAAGTCTAAAAGGCAGTGTAGCTTAGAAATCTGTGTACGTACTTCATGATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAGCCTTAACTGCTCTGTTTAGAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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