SE2850625

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9630
  • Sorghum bicolor
  • SE2850625
  • PIF/harbinger
  • To1
  • chromosome_2:6957401-6957638
  • TGA
  • AGGCCTTGTTTAGTTTGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                      ---TTT       - T - C    --G  GCATTTTCGTTTTT   T  --   ATATTGTCCAATCATAGAGTAACTAGGCTTAAAAGATTCATCTCACAAATTACA
  AGGCCTTGTTTAGTTTGCAAAA      TTGGGTT T G G TACT   TA              ATT GA  CAA                                                      
  ||||||||||||||||||||||      ||||||| | | | ||||   ||              ||| ||  |||                                                       
  TCCGGAACAAATCAAGCGTTTT      TTCTAAG G G A GTGT   TT              AGA AA  AGC                                                      
AG                      TTAAAG       A - C -    AGC  --------------   -  CC   ATACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTAACATGTTAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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