Plant MITE

SE2850628

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9633
Sorghum bicolor
SE2850628
PIF/harbinger
To11
chromosome_1:73265206-73265439
TAA
AGGCCCTGTTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TA   CCC        ------     A GTTTTTTTAACAACTATCACATCGAATGTTTGGACACATGCATGGAGTACTAAATATAGACTATTTAAGAAACTAAAAAGACAGCTAGAGG
  AGG   TGTTTGGT      TCCTC T                                                                                           
  |||   ||||||||      ||||| |                                                                                           A
  TCC   ACAAACCA      ACAAT T                                                                                           
AA   CCC        ACCTCC     - TCAAATTGTCCATGACATCGTAAAGCAAAATAAACCATTAATCACAGGTTAGTACCTGATTAATCCGAATTTTCTAAGCAGAGAGTTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850628

TAAGGCCCTGTTTGGTTCCTCATGTTTTTTTAACAACTATCACATCGAATGTTTGGACACATGCATGGAGTACTAAATATAGACTATTTAAGAAACTAAAAAGACAGCTAGAGGATAATTTGAGAGACGAATCTTTTAAGCCTAATTAGTCCATGATTGGACACTAATTACCAAATAAAACGAAATGCTACAGTACCTGTTAAACTTTAACACCTCCAACCAAACACCCCCTAA

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