Plant MITE

SE2810629

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9634
Sorghum bicolor
SE2810629
Tc1/Mariner
St13
chromosome_5:16306111-16306349
TA
TACTCAATCCATCCCAAATTATAAAGACATTTGACTTTTTTGACACCAAGTTTAACCACTCATCTTATTCAAAAATTTATGCAA

Secondary structure and sequence

TSD TIR

5'

3'

     AA                 A  CA     C         A        A      CA             -         AATATCACTTCTTTTATCATG  T     TATTAGTAAAA     T
TACTC  TCCATCCCAAATTATAA GA  TTTGA TTTTTTGAC CCAAGTTT ACCACT  TCTTATTCAAAAA TTTATGCAA                     GC TAGTC           GTTCT 
|||||  ||||||||||||||||| ||  ||||| ||||||||| |||||||| ||||||  ||||||||||||| |||||||||                     || |||||           ||||| C
ATGAG  AGGTAGGGTTTAATATT CT  AAACT AAAAAACTG GGTTCAAA TGGTGA  AGAATAAGTTTTT AAATACGTT                     TG ATCAG           TAAGA 
     GG                 -  AC     -         G        C      AC             T         ---------------------  T     TTTAAATTCAG     A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810629

TACTCAATCCATCCCAAATTATAAAGACATTTGACTTTTTTGACACCAAGTTTAACCACTCATCTTATTCAAAAATTTATGCAAAATATCACTTCTTTTATCATGGCTTAGTCTATTAGTAAAAGTTCTTCAAGAATGACTTAAATTTGACTATGTTTGCATAAATTTTTTGAATAAGACAAGTGGTCAAACTTGGGGTCAAAAAATCAAACATCTTATAATTTGGGATGGAGGGAGTA

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