SE2850634

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9639
  • Sorghum bicolor
  • SE2850634
  • PIF/harbinger
  • To2
  • chromosome_2:11501540-11501789
  • TTA
  • AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT                CCAAAAAA            TTTC    TTCCCGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGATGAAAATAAAAACTAATTGCACAGTTTGGT
   AGGCCTTGTTTAGTTT        TTTTGCAAAATT    AGAT                                                                                
   ||||||||||||||||        ||||||||||||    ||||                                                                                C
   TCCGGAACAAATCAAG        AAAATGTTTTAG    TATG                                                                                
CAT                -ATTTAAA            ---C    ACATCGTGAAAGCAAACATAAACTGTTTTTAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAACAGAGCAGTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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