SE2830637

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9642
  • Sorghum bicolor
  • SE2830637
  • hAT
  • Hat47
  • chromosome_3:62601769-62602461
  • GTGTGCAT
  • GTGTGCATTAAAGTTGAAAACGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                       -  GAAAACGAA   AAAATC     AT -     -- A   -  ATATTTTTAGACGAAAACGGAAGTGGAAGCCGGACAACCGGGAGCGAAAACGGTAGCGGGATAAACGGTAATACGAAAACGGGTAAATACGATCGGAAAATAGACAGAAACGAGCAGTAAGCGAAAAATTGAACCGGAACATGTAAAGCTCCATATGATAGCGTAAATACAGAGACCAAAATGCAATACCAAATATCAAATATGCACTGATCAGTGACTAGTGACCACATTAATACAATACCACATATCCATAGTCCATAGATCACAATTAACACAAATATGAATTA
GTGTGCATTAAAGTTGAAAACGG AC         GGT      GCTTT  C ATTTC  C TTT TC                                                                                                                                                                                                                                                                                               
||||||||||||||||||||||| ||         |||      |||||  | |||||  | ||| ||                                                                                                                                                                                                                                                                                               T
TACGTGTGATTTTAACTTTTGCC TG         AGG      GCAAA  G AGGCG  G GCA AT                                                                                                                                                                                                                                                                                               
                       C  ----TATCT   ------     -- C     TT -   T  GGCATAAAAGGGCAAGCAAAAGCAAAAAATGCCCTATTTGCCTTTACCCTGGCGTTTGCCCTGCCTAATTTTGCCCTCGCCCTAGCTTTTGCCATCTTGCAAACAGGCAGGCATAAACGCCTTAGGGCAAAGATAGGGCAAAAAGTATTTTTGCCCTTTCATCGGGTTGTATCAGGAATTTGGGTTATACCGGATTTTACAGAGAACAGAATATCCTACATACCTATTAAGTATAAATACACTTAATACTAGATACCTGATACCTATACAAGAATACACTACATACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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