SE2850638

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9643
  • Sorghum bicolor
  • SE2850638
  • PIF/harbinger
  • To75
  • chromosome_2:47743252-47743585
  • TAA
  • AGGGCCTGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C                         CATGAGCTGTTGTGAGCTGTTTTTTTTTGCCAAACACTTATTTCCAAAACAGCTTCATGGGTGAAGCTGTTTTTCTCCTCCTCTCACAAAGACATAAGTTGGGATGAAGCTGAAAAAAGTACCTTATTGCAGCT
  AGGGC TGTTTGGTACAGCTCACAACAGCTT                                                                                                                                      
  ||||| |||||||||||||||||||||||||                                                                                                                                       
  TCCCG ACAAACCGTGTCGAGTTGAAGTGAT                                                                                                                                      
AA     A                         CATTTTGACAAAAAAATCTTTTATCGAAGTACTCACTGAAAGATCTACTTCGACTCGACAAAACCTTTTTCACAAACCGTTTTATCGAAGTGTTTGATGAAGTACGTATCAACTCTCTCTCTTTACTCTCTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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