Plant MITE

SE2850639

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9644
Sorghum bicolor
SE2850639
PIF/harbinger
To2
chromosome_6:32110726-32110976
TTA
AGGCCTTGTTTACTTGTAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT            -C  G     T            ATAAATAG      ---   C         T -    ATATTGTCCAATCATAGACTAACCCTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACC
  AGGCCTTGTTTA  TT TAAAA ATTTTGCAAAAT        TACCAA   TTT GTTTGTATT G ACAA                                                           
  ||||||||||||  || ||||| ||||||||||||        ||||||   ||| ||||||||| | ||||                                                            
  TCCGGAACAAAT  AG GTTTT TAAAACGTTTTA        AAAAGT   AGA GGCAGTGTA G TTAG                                                           
AT            CA  G     T            --------      CTA   -         - C    AAATCTGCATACGTATTTCATAATTTATATCTGCTTTTATTTTTAATTAATGTGTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850639

TTAGGCCTTGTTTACTTGTAAAATATTTTGCAAAATATAAATAGTACCAATTTCGTTTGTATTTGACAAATATTGTCCAATCATAGACTAACCCTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAATTGTGTAATTAATTTTTATTTTCGTCTATATTTAATACTTTATGCATACGTCTAAAGATTCGATGTGACGGAGAATCTGAAAAATTTTGCAAAATTTTTTGGGAACTAAACAAGGCCTTA

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