SE2850643

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9648
  • Sorghum bicolor
  • SE2850643
  • PIF/harbinger
  • To2
  • chromosome_5:6460250-6460495
  • CAA
  • GGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA               CCAAAAAAAA         TTTTCAGATTTCCC    --  TCGAATCT  -  GCACATGCATGTAACATTAAATATAGATAAAAAATAACTAATTGCACAGTTTGTTTATAATT
   GGCCTTGTTTAGTTC          TTGCAAAAT              GTTA  CA        TG CG                                                              
   |||||||||||||||          |||||||||              ||||  ||        || ||                                                              T
   CCGGAATAAATCAAG          AACGTTTTA              TGAT  CG        TG AA                                                              
AAC               --AAAAAAAA         ----------CCTG    AT  --------  A  ATAAATATAAACTGTTTATAACAGATTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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