Plant MITE

SE2850646

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9651
Sorghum bicolor
SE2850646
PIF/harbinger
To28
chromosome_3:44955002-44955517
TTA
AGGGCCTGTTTGTTTCCC

Secondary structure and sequence

TSD TIR

5'

3'

TT     C      T  -   TTCT  T   AACCAGGCCAGCTCTAGGGAGCCGGGCTGCCTTTGGCCTGGCCGAGTGCATGCAGGAAGTCTAGTTTGGTTGCATGTATATGTGGAGCCAGGCTCTGATTAGATGCTGTTTGGTTGTTTGTACGAAGATAAGCTGTATGAGATAAAAAATATTATAAAATTATGATTATAATTTTTATTTTTATACGAATACACTCTTAGAGGTCTTATTTTATCTAATTATATCTTAAT
  AGGGC TGTTTG TT CCC    CA CTC                                                                                                                                                                                                                                      
  ||||| |||||| || |||    || |||                                                                                                                                                                                                                                       
  TCCCG ACAAAC AA GGG    CG TAC                                                                                                                                                                                                                                      
AT     C      C  C   ----  -   TCTGGTATGTACATAGAACCCTACGTCGCACCGAGACAAACCAACGGACGTACATCGAAACCCGGTCTGAGACTCGTACGTTTTTCCTCGGGAGTCGGTCCGACTCCTCCTTGCGGATTTAGCTGGCAAAGACCGGTCGGTCCGACCCGTCTACGTCGGCAAATGCACCGATTGACACATAATCACGTACTAATCATTTATAGTTCACTATAATCACATAAAATTTCAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850646

TTAGGGCCTGTTTGTTTCCCTTCTCATCTCAACCAGGCCAGCTCTAGGGAGCCGGGCTGCCTTTGGCCTGGCCGAGTGCATGCAGGAAGTCTAGTTTGGTTGCATGTATATGTGGAGCCAGGCTCTGATTAGATGCTGTTTGGTTGTTTGTACGAAGATAAGCTGTATGAGATAAAAAATATTATAAAATTATGATTATAATTTTTATTTTTATACGAATACACTCTTAGAGGTCTTATTTTATCTAATTATATCTTAATCAACTTTAAAATACACTAATATCACTTGATATTTACTAATCATGCACTAATACACAGTTAGCCACGTAAACGGCTGCATCTGCCCAGCCTGGCTGGCCAGAAACGGTCGATTTAGGCGTTCCTCCTCAGCCTGGCTGAGGGCTCCTTTTTGCATGCTCAGAGTCTGGCCCAAAGCTACATGCAGGCAACCAAACAGAGCCACGCTGCATCCCAAGATACATGTATGGTCTCATGCGGGCAACCAAACACGCCCTTA

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