SE2850647

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9652
  • Sorghum bicolor
  • SE2850647
  • PIF/harbinger
  • To2
  • chromosome_8:51475793-51476041
  • TTA
  • AGGCCTTGTTTAGTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 CAAAAAA            ------TTTC   TTCCTCGTCACATCGAATCTTTAGACGCATGTATAGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTT
  AGGCCTTGTTTAGTTTC       TTTTGCAAAATT          AGA                                                                             
  |||||||||||||||||       ||||||||||||          |||                                                                              
  TCCGGAACAAATCAAAG       AAAACGTTTTAG          ATG                                                                             
AT                 -TAAAAA            CTGTGACATC   AAAGCAAACATAAACTGTTTTTAATAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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