SE2850648

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9653
  • Sorghum bicolor
  • SE2850648
  • PIF/harbinger
  • To77
  • chromosome_2:57563603-57563746
  • TAA
  • AGGGCTTGTTTGGATGGGCATGTATTTACCTCAATCCACATGTGTTGAAGTGGATTGGAGGGGATTTAAACTAAGCTCCACTCTAATCCACTCCAATACAGATGGTTTGAGGTAGATACATGCGCATCCAAACAAGGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G            G                 T   CA       A            G   -    A
  AGG CTTGTTTGGATG GCATGTATTTACCTCAA CCA  TGTGTTG AGTGGATTGGAG GGA TTTA 
  ||| |||||||||||| ||||||||||||||||| |||  ||||||| |||||||||||| ||| |||| A
  TCC GAACAAACCTAC CGTACATAGATGGAGTT GGT  ACATAAC TCACCTAATCTC CCT GAAT 
AA   G            G                 T   AG       C            A   C    C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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