SE2830649

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9654
  • Sorghum bicolor
  • SE2830649
  • hAT
  • Hat48
  • chromosome_2:23102987-23103612
  • ACCTTCTA
  • TCAGATTGTAGGCGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCTTCTAC    A           ---        TTAACATAACCCGCCCGTTCGCCCCGTAAAATTTGGCTTCGTGGCTGTCGCGGACTAGCCGTAATTTCTTCGTGGTCTAGTGACTGCCAACCCACCAAGCCCGTTAGACGAACGAGCAACCTCACAAGAACTCGCAAGAGCCCGCAAGAGTGAAGAGTAAATATATACGTTATGTCTTTATTTAGTAATAATAACTTTTCTTACAGGATATATGTCTTTGTTTCTATACATGTATTTCTTGATGTTGTTATATTTGAGAACGTACAATATATAGATAGC
         TCAG TTGTAGGCGGG   GCGGGTTG                                                                                                                                                                                                                                                                                       
         |||| |||||||||||   ||||||||                                                                                                                                                                                                                                                                                        
         AGTC AACGTCCGCCC   TAAGCGCT                                                                                                                                                                                                                                                                                       
 CATCTTCC    C           GAA        GGCAGGCGCTTGGGCATAGCGAACGGCGTTTCAAACAAACGCCCGAACGCCGGTTGGCGATTCGATATTTGAAGCGCCCATTTAAAAAGCGCCTGTATTGTATGATCCGACGATTTAGGCGTTCTGGACGATATGTTATCACCTCTGATGCACTTATAACAGAGAGAAGTGCATGTATAACATTCTTAAATCTTAGATATTCGATTTATAAATATAGGTCAATTAGCTGCTCGTGTCTATTATGTTGAAACGTGATTAGTAAAATTAAAAGTATAGGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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