Plant MITE

SE2850650

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9655
Sorghum bicolor
SE2850650
PIF/harbinger
To2
chromosome_10:42862837-42863085
TTA
AGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TT            C    ACCCAAAAACCCAAAAT   TT   -----  -  TCTGTCACATCGAATCTTTAGACGCATGCATGGAGCATTAAATATAGACAAAAATAAAAACTAATTGCACAGTTTGGTCG
  AGGCCTTGTTTA TTCC                 TTT  AAG     AT TC                                                                                
  |||||||||||| ||||                 |||  |||     || ||                                                                                A
  TCCGGAACAAAT AAGG                 CTT  TTT     CG TG                                                                                
AT            C    ------------ACTTC   --   TAAAG  C  TCACATCGAGAAAGCAAACAAACACCATTAATAACAGATTGGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850650

TTAGGCCTTGTTTACTTCCACCCAAAAACCCAAAATTTTTTAAGATTCTCTGTCACATCGAATCTTTAGACGCATGCATGGAGCATTAAATATAGACAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCTATGGTTAGACAATAATTACCACAAACAAACGAAAGAGCTACACTGTCGCGAAATTTTTTCCTTCAGGAACTAAACAAGGCCTTA

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