Plant MITE

SE2850653

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9658
Sorghum bicolor
SE2850653
PIF/harbinger
To78
chromosome_2:47480885-47481233
TTA
AGGGCCTGTTTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT               CCCAAATT  --    TC     AGTTTTGGCTGTAAACTTTACATCCAAATAGGTGTTTAGATGCTTCCAAAAACTTTTTGGTCTGCAACACATAAGACAGATTTGCCCTTATTTAATGCTTGATTTGGTTCATTAATTGAAGTACATGCATATGATTGCTG
  AGGGCCTGTTTAGAT        TT  TACA  CCAAA                                                                                                                                            
  |||||||||||||||        ||  ||||  |||||                                                                                                                                            G
  TCCCGGACAAATCTA        CG  GGTT  TTTGG                                                                                                                                            
AT               --------  TT    --     TTTTACAAAACCTCTTTACATGTGAAAAACCTTCTTACCCCCAGACATTTGGTACTCGACATTTCTAAACCTTAAACCCTGAGAACTCAGGGTTTTGACAGGTTTTTCACGGATCCCTAGGCTCAACCTGCCCATATGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850653

TTAGGGCCTGTTTAGATCCCAAATTTTTACATCCCAAAAGTTTTGGCTGTAAACTTTACATCCAAATAGGTGTTTAGATGCTTCCAAAAACTTTTTGGTCTGCAACACATAAGACAGATTTGCCCTTATTTAATGCTTGATTTGGTTCATTAATTGAAGTACATGCATATGATTGCTGGGGGTATACCCGTCCAACTCGGATCCCTAGGCACTTTTTGGACAGTTTTGGGACTCAAGAGTCCCAAATTCCAAATCTTTACAGCTCATGGTTTACAGACCCCCATTCTTCCAAAAAGTGTACATTTCTCCAAAACATTTTGGTTTTTGGTTGCATCTAAACAGGCCCTTA

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