SE2850657

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9662
  • Sorghum bicolor
  • SE2850657
  • PIF/harbinger
  • To79
  • chromosome_1:26917580-26917781
  • TTA
  • AGGCCAGTCTCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT               TAATTTCATC           GA ATTAAATATGC       GCACCATATTAATGAAGTGAGAGATAATAAGAGTTTTATGGGAGAAGAGAG
   AGGCCAGTCTCAATG          AGAGTTTTATG  C           TGATGTG                                                   
   |||||||||||||||          |||||||||||  |           |||||||                                                   A
   TCCGGTCAGAGTTAC          TCTCAAAGTAC  G           GTCAAAG                                                   
TAT               ---------C           AG -----------       GTTGTGTAAACTAAAATCTTTGGCACGTATTCTTAAAGTACCCCTACTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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