Plant MITE

SE2850658

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9663
Sorghum bicolor
SE2850658
PIF/harbinger
To64
chromosome_3:58181563-58182205
TAA
AGAGCATCTCCAAGGGACTTTGCAAATGAATTTTGCAT

Secondary structure and sequence

TSD TIR

5'

3'

TA                A                     --     GTTA              AACTCA  TGCAAAGTCTAAAAATGGTCCAACTCCAAGGGACTTTGCATTTAGACTTGGCAAACCCAAAGTGTGGACCCCACCTCTAAATTTTTTTTCACCGATCGCGCCCGCGCGTTTTTTTCCCTTCGCGCCATTTTGACGTACGTCGTGTGTGCCAGTCGCCGCCCAGGCCAAGTCGCCGCCAGTTGCCGCCCGGCCCAGGTCTTCGCGCCAGTCGTCGCCCAGCCCAGGCCGCGTTCGTCGTTCGTCGCCGTCGTCGTT
  AGAGCATCTCCAAGGG CTTTGCAAATGAATTTTGCAT  TTGGT    TTTGCAAAGTCCCA      TT                                                                                                                                                                                                                                                               
  |||||||||||||||| |||||||||||||||||||||  |||||    ||||||||||||||      ||                                                                                                                                                                                                                                                                
  TCTCGTAGAGGTTCCC GAAACGTTTGTTTGAAACGTA  GGGAT    AAACGTTTTTTCTC      AT                                                                                                                                                                                                                                                               
AA                -                     AC     ----              ------  CTTTTATGGGGAGGTTACCAAAACGTTTATTCCAAACGTTAAACCAATTGAAACGTTTATCTCCAACTCCGAAATGTATATACGTTTGGAAGGGTGGTGAAACGTAGATGTTAAAGCCGGAAGGTGCAGCCTGAGGCAGGGGGGCCGGTGCAGACCTGCTGCATGCGCCGGTGCCGCGCCCTTGCCTCCACCTGGAAATGAGTGCCCCTGGAAGGGAGCCTCCTCCTGTCTCCACCTGCCTCGGCTTGACTGCGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850658

TAAGAGCATCTCCAAGGGACTTTGCAAATGAATTTTGCATTTGGTGTTATTTGCAAAGTCCCAAACTCATTTGCAAAGTCTAAAAATGGTCCAACTCCAAGGGACTTTGCATTTAGACTTGGCAAACCCAAAGTGTGGACCCCACCTCTAAATTTTTTTTCACCGATCGCGCCCGCGCGTTTTTTTCCCTTCGCGCCATTTTGACGTACGTCGTGTGTGCCAGTCGCCGCCCAGGCCAAGTCGCCGCCAGTTGCCGCCCGGCCCAGGTCTTCGCGCCAGTCGTCGCCCAGCCCAGGCCGCGTTCGTCGTTCGTCGCCGTCGTCGTTCGCGTCAGTTCGGCTCCGTCCACCTCTGTCCTCCTCCGAGGGAAGGTCCCCGTGAGTAAAGGTCCACCTCCGTTCCCGCGCCGTGGCCGCGTACGTCGTCCAGACGTGGCCGGGGGGACGGAGTCCGACGTGGAAGGCCGAAATTGTAGATGCAAAGTGGTGGGAAGGTTTGCATATATGTAAAGCCTCAACCTCTATTTGCAAAGTTAACCAAATTGCAAACCTTATTTGCAAAACCATTGGAGGGGTATTTTCTACTCTTTTTTGCAAATAGGGCAATGCAAAGTTTGTTTGCAAAGCCCTTGGAGATGCTCTAA

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