SE2850665

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9670
  • Sorghum bicolor
  • SE2850665
  • PIF/harbinger
  • To1
  • chromosome_8:1876310-1876557
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ---     -   AGTTTTTAGATTTTGACACTGTAGCATTTTTGTTTTTATTTAACAAATATTGTCCAATTATAGACTAACTAGACTTAAAAAATTCGTCTCGTGATTTAC
  AGGCCTTGTTTAG   ATCTA AAA                                                                                                   
  |||||||||||||   ||||| |||                                                                                                    
  TCCGGAACAAATC   TGGAA TTT                                                                                                   
AA             AAG     G   TGGTTTTTGAAAAGTTCTAAAGGCAGTGTAACTTACAACGCCGTGTACGTACTTTGTGATTTATATCTGCCTTTGTTTTTGATTAACGTGTCAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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