Plant MITE

SE2830668

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9673
Sorghum bicolor
SE2830668
hAT
Hat15
chromosome_9:50834709-50834896
GTTAGGAC
GACCATAGTCACAAA

Secondary structure and sequence

TSD TIR

5'

3'

GTTAG     T         ---     -  --------- GTC A  -     G G    G GGTCGCGGTACGTGGTACTCTACTTGCGAGAGATTTTAGAC
     GACCA AGTCACAAA   GTTTC TT         G   G TG GGGTC A GTAC G                                         
     ||||| |||||||||   ||||| ||         |   | || ||||| | |||| |                                          
     TTGGT TCAGTGTTT   GCCCA GT         T   G GG ACTGG C CCAA C                                         
CAGGA     T         TTT     A  GGTGGAAGC --- -  A     - -    G AACTGGGGTTGGGCCCAAGTGCCCAAGTAAAAGCTGGGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830668

GTTAGGACCATAGTCACAAAGTTTCTTGGTCGATGGGGTCGAGGTACGGGGTCGCGGTACGTGGTACTCTACTTGCGAGAGATTTTAGACTTCGGGTCGAAAATGAACCCGTGAACCCGGGTTGGGGTCAACGAACCCGGTCAAGGGTCGAAGGTGGTGAACCCGTTTTTTGTGACTTTGGTTAGGAC

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