Plant MITE

SE2830669

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9674
Sorghum bicolor
SE2830669
hAT
Hat13
chromosome_7:59355375-59355555
CTTGGTGA
CAGTGGCGGATCCATAATGGGG

Secondary structure and sequence

TSD TIR

5'

3'

CTTGGTGA   T        CAT  T    ACAAAGGAGAG      TAGTAAACATATAGGATTAAAACTAGAGATTAATAAGAATTTAAGGTTAA
        CAG GGCGGATC   AA GGGG           ACTAAA                                                  
        ||| ||||||||   || ||||           ||||||                                                   
        GTC CCGCCTAG   TT CCCC           CCGACC                                                  
AGTGGTTC   C        --C  T    -----------      CACCCGAGGTCGGGAGATACTCGGACTAAACAGGTGATTTAATCATAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830669

CTTGGTGACAGTGGCGGATCCATAATGGGGACAAAGGAGAGACTAAATAGTAAACATATAGGATTAAAACTAGAGATTAATAAGAATTTAAGGTTAATTAATACTAATTTAGTGGACAAATCAGGCTCATAGAGGGCTGGAGCCCACCCAGCCCCCCTTTCGATCCGCCCCTGCTTGGTGA

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