SE2850670

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9675
  • Sorghum bicolor
  • SE2850670
  • PIF/harbinger
  • To1
  • chromosome_1:65061211-65061448
  • TTA
  • AGGCCTTGTTTAGTTCGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               C      ---ATTTTCA     - CCCGTCACATCGAATCTTTGGTCGCATGCATGGAGCTTTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACCTG
  AGGCCTTGTTTAGTT GCAAAA          AGATT C                                                                                
  ||||||||||||||| ||||||          ||||| |                                                                                 
  TCCGGAACAAATCAA CGTTTT          AACCG T                                                                                
AT               C      AAAACCCAAA     A GACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAATACCTCATTGATCCGAATTTTCTAAGTAGAGTGTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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