SE2830673

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9678
  • Sorghum bicolor
  • SE2830673
  • hAT
  • Hat49
  • chromosome_6:46482048-46482552
  • GCCGGAGC
  • CCGGAGCCAGGGGCGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
  G   GA              T       ------- GC -    GT    C -----       GCCTCCAAAATTTATGGACTCCAAAATTTACTAAGTGTTCTAAGTATATATAATAATTAGTAAAAGCTTGTTACTTCCTTCGTGAGAAAACACATTGAAAGTCCATGATTGTGAGTTAGAAAAGTTTATGGTTGGTAATTTTTCTTCACATAAGTTTGTAACCTTTCGTGAGTTCATGGTTTCGTCCCTTAGAGTTAT
   CCG  GCCAGGGGCGTCCC GAGGCCG       T  G AGCT  GCGA C     GAACTGG                                                                                                                                                                                                      
   |||  |||||||||||||| |||||||       |  | ||||  |||| |     |||||||                                                                                                                                                                                                       
   GGC  CGGTCCCCGCAGGG CCCATTT       G  G TCTA  GTTT T     TCACCTC                                                                                                                                                                                                      
CGA   --              -       ATAACCC -- T    --    - ATTAT       CGGATCACAGATAACAGTTTTAGATTTTTTTTATAATTTATAGTTGTATAATGTTTCTGTTGTATATTTTCTAATTGATTTATTTTATCCCTAATATGGTCCGTTACTAGAGGTAGACCGCAGGATTAGACCCAGGTGGGCAGATATTAACGATAATCCAGAGCTGAGAACTCGCTGCTTGTTGTGGTTCCTGCTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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