Plant MITE

SE2810674

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9679
Sorghum bicolor
SE2810674
Tc1/Mariner
St7
chromosome_6:30396629-30396891
TA
TACTCCCTCCATACCCGTAAAGAAAGTC

Secondary structure and sequence

TSD TIR

5'

3'

        C      C            ATTTTGAGCAA      -AG  AAACATTGAGAATATAAATTATGAATAACTTTTATGTTGTTGAGTTTAGAAATATTAAAACCATATGAATAGATTTGTCCTGAAAA
TACTCCCT CATACC GTAAAGAAAGTC           GCTTTG   TC                                                                                      
|||||||| |||||| ||||||||||||           ||||||   ||                                                                                       
ATGAGGGA GTATGG CATTTTTTTCAG           ATCCTG   CT                                                                                      
        A      T            --------CAA      TTA  GTACCAGAGGTTTAGGATTGAAACTGAAGAACAAAAATATTTTTATAAATAGTTTTTTACCATATATATATAAAAATACTTTCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810674

TACTCCCTCCATACCCGTAAAGAAAGTCATTTTGAGCAAGCTTTGAGTCAAACATTGAGAATATAAATTATGAATAACTTTTATGTTGTTGAGTTTAGAAATATTAAAACCATATGAATAGATTTGTCCTGAAAAATACTTTCATAAAAATATATATATACCATTTTTTGATAAATATTTTTATAAAAACAAGAAGTCAAAGTTAGGATTTGGAGACCATGTCATTGTCCTAAACGACTTTTTTTACTGGTATGAAGGGAGTA

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