SE2810676

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9681
  • Sorghum bicolor
  • SE2810676
  • Tc1/Mariner
  • St8
  • chromosome_1:58461256-58461403
  • TA
  • TACTCCCTCTGTTCCAAATTATAAGTCGTTATGGCTTTTCTAGATACATAGTTTTTGCTATGCACGATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                    A     C   A                      T        ---CAC     AC
TACTCCCTCTGTTCCAAATT TAAGT GTT TGGCTTTTCTAGATACATAGTT TTGCTATG      GATAT  
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||      |||||  A
ATGAGGGAGGTAAGGTTTAA GTTCA CAA ACCGAAAAGATCTATGTATCGA AATGATAC      CTGTA  
                    C     C   G                      C        ATAGAT     GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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