SE2850677

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9682
  • Sorghum bicolor
  • SE2850677
  • PIF/harbinger
  • To19
  • chromosome_10:4083412-4083628
  • TAA
  • AGGGGGTGTTTGGGACTGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                     CACAAACTC        --------AAA     CCATGGAGCAGCTCCACAAAAAACTGGAGTTTGTGGAGTACATCTTTAGGTGCTCTCACAA
  AGGGGGTGTTTGGGACTGCTC         TGCTCCAT           CTCCA                                                             
  |||||||||||||||||||||         ||||||||           |||||                                                              
  TCCCCCACAAACCCTGACGAG         ACGAGGTG           GGCGA                                                             
AA                     ---------        CAAAAAGTCGA     GGTGCAAAAAATCGGTTTGCCAAAGTCGAGGTGCGTGAGTCAAGCTCCTTTTTCCCACCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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