SE2830680

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9685
  • Sorghum bicolor
  • SE2830680
  • hAT
  • Hat50
  • chromosome_1:13910448-13910620
  • TCTGCCAT
  • GCCATCAGGGGCGAAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCT  CAT   G              TTGTTATTGGGGTCAACTGACCCCAATGAATTTGTGAAAACTCAGTAATAATTACTGTTA
   GC   CAG GGCGAAGCTAGGCT                                                            
   ||   ||| ||||||||||||||                                                            T
   CG   GTC CCGCTTCGGTCGGT                                                            
TAC  TCT   A              TTTCACCGCGGCCCCAGTCATGATTACATGTATCCCCAGAAACGGTAACTTCTTGTCATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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