Plant MITE

SE2850681

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9686
Sorghum bicolor
SE2850681
PIF/harbinger
To2
chromosome_4:14179263-14179511
TTA
AGGCCTTGTTTAGTTCCCAAAAAATTTTGTAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 C    A             TTTC     ----------TCC  TCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGATAAAATTAAAAACTAATTGCACAGTT
  AGGCCTTGTTTAGTTCC AAAA ATTTTGTAAAATT    AGATT             CG                                                                      
  ||||||||||||||||| |||| |||||||||||||    |||||             ||                                                                       
  TCCGGAACAAATCAAGG TTTT TAAAACGTTTTAA    CTGTG             AA                                                                      
AT                 -    A             ----     GCATCGAAAAAGC  ACATAAACTGTTTATAATAGGTTAGTATCTGATTGATCTGAGTTTTCTAAACAAAGCAGTTAAAGCTGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850681

TTAGGCCTTGTTTAGTTCCCAAAAAATTTTGTAAAATTTTTCAGATTTCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGATAAAATTAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAAACAAATCTTTTGAGTCTAGTTAGTCTATGATTGGATAATATTTGTCAAATACAAACGAAAAAGCTACGGTGTCAATTTTGCAAAATATTTTGGAACTAAACAAGGCCTTA

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