Plant MITE

SE2850682

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9687
Sorghum bicolor
SE2850682
PIF/harbinger
To2
chromosome_2:58020856-58021104
CTG
GGGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CT                 -    T            CGACAC  T    --- TT  -    -     --T     ATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTC
  GGGCCTTGTTTAGTTCC AAAA ATTTTGCAAAAT      TG AGCT   T  TT GTTT GTATT   GACAA                                                     
  ||||||||||||||||| |||| ||||||||||||      || ||||   |  || |||| |||||   |||||                                                     G
  CCCGGAACAAATCAAGG TTTT TAAAACGTTTTA      TC TAAG   C  AG GTAG TTAGA   CTGTG                                                     
GT                 G    T            -AAAAA  -    AGG --  T    C     AAT     TACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850682

CTGGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATCGACACTGTAGCTTTTTTGTTTGTATTTGACAAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGTGTCTAAAGATTCGATGTGACGGAGAATCTAAAAAATTTTGCAAAATTTTTTGGGAACTAAACAAGGCCCTG

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