SE2850685

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9690
  • Sorghum bicolor
  • SE2850685
  • PIF/harbinger
  • To2
  • chromosome_6:55366274-55366522
  • ATT
  • TGGCCTTGTTTAGTTCCCAAAAAATTTTACAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AT                 C    A             TTTC   -   -  ---   -  -TA    ATCTTTAGACACATGCATGAAGTATTAAATATAGACAAAAATAAAAACTAATTGCACAGT
  TGGCCTTGTTTAGTTCC AAAA ATTTTACAAAATT    AGA TTC TC   CGT CA   TCGA                                                            
  ||||||||||||||||| |||| |||||||||||||    ||| ||| ||   ||| ||   ||||                                                            T
  ACCGGAACAAATCAAGG TTTT TAAAATGTTTTAG    GAC TCG GA   CAA CA   ACTG                                                            
TT                 -    A             CTGT   A   A  AAG   A  TAA    TTTATAACACGTTAGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAGCTGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3