SE2850694

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9699
  • Sorghum bicolor
  • SE2850694
  • PIF/harbinger
  • To4
  • chromosome_9:2935307-2935544
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               GGGGA        -G   T   CTACTATAGCACTTTCGTTTGTATTTGACAAATATTATCCAATTATAGACTAATTAGGCTCAAAAGATTTGTCTCGCAAATT
  AGGCCTTGTTTAGTT     AAATTTTT  GCT TGG                                                                                  
  |||||||||||||||     ||||||||  ||| |||                                                                                   
  TCCGGAACAAATCAA     TTTAAAAA  TTC TAA                                                                                  
AA               --AGG        AG   -   GGGGCAATGTAGCTTAGAAATCTGCGTACGTATCTTGTAATTTATATTTATTTTCTTTATTGATTAATGTGTCAAACAGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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