SE2830700

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9705
  • Sorghum bicolor
  • SE2830700
  • hAT
  • Hat16
  • chromosome_9:9072255-9072780
  • GAACTCGG
  • CGGTATAGATGGCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAACT   ----             GCA       GCACGACGGCCCGGCCCACGGCACGGCATTTTGGCTCGGCCCGACACGGTAACTCGTGGGCTCGGGCCGGTCCGGTCCGGTGGTGCGGGCCATGCTTGGACCGACCTTTGAGCCCGCGGGCTGGCACGACACGGTCCGAGTTTTAGGAGTTGACATTATGTTACATGTTTTTTAATGTCATTTCTATGATTTAAGACTGAGATTATGAATCTGAGAAGTTGAGAGTTGTAAAA
     CGG    TATAGATGGCCAT   GCCCGAG                                                                                                                                                                                                                                         
     |||    |||||||||||||   |||||||                                                                                                                                                                                                                                         A
     GCT    ATATCTACCGGTA   GCCCGGC                                                                                                                                                                                                                                         
    G   CAAG             ---       CCGGCCGGGCCCGGGCTCGGCCCGTGCCCGACATCGCACGGCACGGCTAAACCGGGTGCACGGACGGCACGGCACGGAGTCGTCGGGCGCACGGACCGGAAGCCGGGTTCGTGCCCGGGTGCCCGACTGAAGCACGGCACGGCCGGGCGCATCGGGCCGCCGGGCAAAACATTTTTTTGTTTTATTGGTGTGTTACAGTTACTAGTGAAGTGGTTGTATTACGGTGTTAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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