Plant MITE

SE2850702

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9707
Sorghum bicolor
SE2850702
PIF/harbinger
To1
chromosome_2:73502187-73502424
TTA
AGGCCTTGTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TT             --TTCTC       TTC       CC  TCACATCGAATCTTACGACACATGCATGAAGCATTAAATATAGACGAAAATAAAAACTAATTCTACAGTTTACCTGTAA
  AGGCCTTGTTTAG       AAAATTT   AAGATTC  TG                                                                               
  |||||||||||||       |||||||   |||||||  ||                                                                               A
  TCCGGAACAAATC       TTTTAAA   ACCTAAA  GC                                                                               
AT             TAACTCT       ---       --  TATGACATCGTGAAAGCAAACAAACACCGTTTATAATAGGTTAGTATCTGATTGATCCTAGTTTTCTAAGCAGAGCGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850702

TTAGGCCTTGTTTAGTTCTCAAAATTTTTCAAGATTCCCTGTCACATCGAATCTTACGACACATGCATGAAGCATTAAATATAGACGAAAATAAAAACTAATTCTACAGTTTACCTGTAAATCGCGAGACGAATCTTTTGATCCTAGTTAGTCTATGATTGGATAATATTTGCCACAAACAAACGAAAGTGCTACAGTATCGAAATCCAAAATTTTTCTCAATCTAAACAAGGCCTTA

Copy Cancel