SE2850705

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9710
  • Sorghum bicolor
  • SE2850705
  • PIF/harbinger
  • To1
  • chromosome_1:3438622-3438859
  • TTA
  • AGGCCTTGTTCAGTTCGCGAAAATTTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          C    CG             TTTTA    CTGTAGCACTTTCGTTTGTTTGTGACAATTATTATCTAATTATGGAGTAACTAGGCTCAAAAGATTCGTCTCGCAAATTA
  AGGCCTTGTT AGTT  CGAAAATTTTTGG     GCTA                                                                                
  |||||||||| ||||  |||||||||||||     ||||                                                                                 
  TCCGGAACAA TCAA  GTTTTTAAAAGTT     TAAA                                                                                
AT          A    AG             ----C    GGGCAGTGTAGCTTAGAAATATGTGTACGTACTTCGTAATTTACATCTACTTTTATTTTTGATTAACGTATCAAACAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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