SE2820711

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9716
  • Sorghum bicolor
  • SE2820711
  • Mutator
  • M12
  • chromosome_5:16371203-16371876
  • TGAAAGAAG
  • GAGGCTTTTACATGTATGCCATTATAAAAAGTTGGTAATTACCTACAAGCCATTAAAAAAGTTGAGCTCTCACATGTGCCACTGCTCCGAACTCTCTTACCCTCTACGCCACTTCCGTCACATTTGACTCTAACGGTGTTAAACT

Secondary structure and sequence

TSD    TIR
5'



3'
 TGAAAGAA          C                  A            C  C   CC               C       T    C       C       C  A    C  C C  C        C     A      C       ---    ACAT  AC       CA           CATGTTTA     CC     -T                 C   C  A          -    A     A     C          TTGAGATCT        T   TAAAAAATATTTTATTTGA            TAA       ------     A    TATT   C    CAA
         GAGGCTTTTA ATGTATGCCATTATAAAA GTTGGTAATTAC TA AAG  ATTAAAAAAGTTGAG TCTCACA GTGC ACTGCTC GAACTCT TT CCCT TA G CA TTCCGTCA ATTTG CTCTAA GGTGTTA   AACT    GT  GAAAAGT  AAAAATACCCT        AATAT  AATTA  TTTTTTGAGTATCTTAA GAT TT AATGAAAAAA CTCA AACTA AAAGT GTAGATCTCG         ACAATATT ATA                   TTTTGTATAAAA   TATTTTT      TTCTA GACA    AAT ATAT   
         |||||||||| |||||||||||||||||| |||||||||||| || |||  ||||||||||||||| ||||||| |||| ||||||| ||||||| || |||| || | || |||||||| ||||| |||||| |||||||   ||||    ||  |||||||  |||||||||||        |||||  |||||  ||||||||||||||||| ||| || |||||||||| |||| ||||| ||||| ||||||||||         |||||||| |||                   ||||||||||||   |||||||      ||||| ||||    ||| ||||    
         CTCCGAAAAT TACATATGGTAATATTTT CAATTATTAATG AT TTC  TAATTTTTTCAACTC AGAGTGT TACG TGACGAG TTTGAGA AA GGGA GT C GT AAGGCAGT TAAAC GAGATT CCACAGT   TTGG    CA  CTTTTCA  TTTTTATGGGA        TTATA  TTAAT  GAGAAACTCGTAGAATT CTA AG TTACTTTTTT GAGT TTGAT TTTCA CATCTAGAGC         TGTTATAG TAT                   AAAACGTATTTT   ATAAAAG      AAGGT CTGT    TTA TATA   
AAGAAAGTA          A                  -            A  A   AA               A       C    A       A       A  C    A  A A  A        C     C      A       AGT    CACT  CA       -A           --------     CA     TT                 A   T  G          T    C     A     A          ---------        T   -----------------TC            -TA       TAACTT     -    -TTT   -    CTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End