SE2850713

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9718
  • Sorghum bicolor
  • SE2850713
  • PIF/harbinger
  • To2
  • chromosome_2:50000687-50000935
  • CCA
  • GGCCTTGTTTACTTCCTAAAATTTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCA           C          -           ATGAATAGCACCACTTT    ----   ATTTGACAAATATTGTCCAATCATGGACTAACTAGGTTCAAAAGATTCGTCTAGCAAATTACAGGTAAA
   GGCCTTGTTTA TTCCTAAAAT TTTTGCAAAAT                 TGTT    TGT                                                                     
   ||||||||||| |||||||||| |||||||||||                 ||||    |||                                                                     C
   CCGGAACAAAT AAGGGTTTTA AAAACGTTTTA                 AAGT    GGG                                                                     
ACC           C          T           ---------------AA    GTAA   GTAGTGTAGCTTAGAATGCCGTGTACGTACCTCGTGATTTATATCTATTTTCTTTATTGATTAATGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3