Plant MITE

SE2850714

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9719
Sorghum bicolor
SE2850714
PIF/harbinger
To13
chromosome_4:49556405-49556696
TTA
AGAGCAACTCCAACAGATTGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

TT             C  A       TTTTTGTTGTGAAGG        --G  TTTGTA -   -- AAA        CCAACAGTTGTGCTATATGCTTTTGTAAAATAGAAAGTTGGCTATCCCTTGATTTTTGGTGGCTATATATAGCCAACCA
  AGAGCAACTCCAA AG TTGGCTA               CTATTTTA   AA      A AGC  A   AGTAGACT                                                                               
  ||||||||||||| || |||||||               ||||||||   ||      | |||  |   ||||||||                                                                                
  TCTCGTTGAGGTT TC AACCGAT               CGATCGGT   AG      G AAC  A   TCGGTAAA                                                                               
AT             C  G       ----------TTTAA        TTA  ------ T   AA ---        ACATTTTATCTTTTGAAAAATTTTTTCTTCTCTAGGTGTTGTCGGAACAATAAAATGTTTTAGTTGATCGATCACAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850714

TTAGAGCAACTCCAACAGATTGGCTATTTTTGTTGTGAAGGCTATTTTAGAATTTGTAAAGCAAAAAGTAGACTCCAACAGTTGTGCTATATGCTTTTGTAAAATAGAAAGTTGGCTATCCCTTGATTTTTGGTGGCTATATATAGCCAACCAATAACACTAGCTAGTTGATTTTGTAAAATAACAAGGCTGTTGTGGATCTCTTCTTTTTTAAAAAGTTTTCTATTTTACAAAATGGCTAAACAATGGAATTTGGCTAGCAATTTTAGCCAAGCTCTTGGAGTTGCTCTTA

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