SE2850719

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9724
  • Sorghum bicolor
  • SE2850719
  • PIF/harbinger
  • To84
  • chromosome_2:75151077-75151461
  • TAA
  • AGAGCAACTTCAACAGTTTGCTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
   TA                          CTC         - TCTATAGTTTTGCCAAGTCTCAAAACCAAATGCCAAATAAAAAAGAGGCATTCTCCAACAGTTTACTATTTGGGCTCGGCAAAAGAACTTGGCATCCTAGGATTTTTGCCAAAATCACAAAATTGAGCCTCCAACAAGTTGGCAAAATTA
     AGAGCAACTTCAACAGTTTGCTAAAA   ACTTGGTAA A                                                                                                                                                      
     ||||||||||||||||||||||||||   ||||||||| |                                                                                                                                                       
     TCTCGTTGAGGTTGTCAAACGATTTT   TGAACCGTA G                                                                                                                                                      
CGGAA                          -CA         A ATCTTAAAAACGATTTTGGTGTTTTTTGTCGGAGGTTGTTCAACCGTTTTGATGAACTGTTAAAATACTCGAACCGTTTTAAGGAGGAAGTGAACCGTTTATACGGTTCAGGAGGTAGTGAACCGTAGTGCACATAGGATTAAACGGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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