SE2850722

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9727
  • Sorghum bicolor
  • SE2850722
  • PIF/harbinger
  • To2
  • chromosome_1:9888916-9889388
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               CC       GAAAAGTTT       T                 TTG              C   C              A          C       -     ACAGC                                         TA           CCACAAG            AA       ----------------------      CTTTTTGGTTTTC
  AGGCCTTGTTTAGTT  GAAAAGT         TCGGTAC GTAGCACTTTCGTTTGT   TGACAAATATTATC AAT ATAGACTAACTAGG TTAAAAGATT GTCTCGT AATTT     TAAACTGTGTAATTAGTTTTTGTTTTCGTCTATATTTAATG  TCATGCATGTG       ATTCGATGTGAC  GGAATCT                      TGAAAA             
  |||||||||||||||  |||||||         ||||||| |||||||||||||||||   |||||||||||||| ||| |||||||||||||| |||||||||| ||||||| |||||     |||||||||||||||||||||||||||||||||||||||||  |||||||||||       ||||||||||||  |||||||                      ||||||              
  TCCGGAACAAATCAA  TTTTTTA         AGCCGTG CATCGTGAAAGCAAACA   ACTGTTTATAATAG TTA TATCTGATTGATCT AATTTTCTAA TAGAGCA TTAAG     GTTTGACACGTTAATCAAAAATAAAAGCAGATATAAATTAT  AGTACGTACAC       TAAGCTACACTG  CCTTAGA                      CCCTTG             
AA               -A       AAATCTTTT       C                 TAA              A   A              G          A       G     -GCTA                                         GA           AAATTTA            CC       CTTTTCAAAACGTTTTTAAAAA      ATTTCAAGTGGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End