SE2850723

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9728
  • Sorghum bicolor
  • SE2850723
  • PIF/harbinger
  • To85
  • chromosome_5:15910084-15910215
  • TTA
  • AGGCCCCGTTCGTTTCTACAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C         CT   -       ACCAGGAATTATTTCATTTGATCAATGCTTATATAAA
  AGGCC CGTTCGTTT  ACA GGATTTC                                     
  ||||| |||||||||  ||| |||||||                                      
  TCCGG GCAAGCAAA  TGT CCTTAGT                                     
AT     A         -C   A       TACGAACCTTACTTAGGATGACCTTAACGAGACTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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