SE2850731

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9736
  • Sorghum bicolor
  • SE2850731
  • PIF/harbinger
  • To2
  • chromosome_3:1503472-1503966
  • TTA
  • AGGCCTTGTTTAGTTTCC

Secondary structure and sequence

TSD    TIR
5'



3'
TT                -  AAAAAATTTT  -    --     C      C                 TA A                           AC                           C -     G                AAG          C          C           AAT      -   AA         T  ----     G  AAATA             -       T
  AGGCCTTGTTTAGTTT CC          GC AAAA  TTTTT AGATTC CCGTCACATCGAATCTT  G CACATGCATGAAGTATTAAATATAGAC  AAATAAAAACTAATTACACAGTTTGGT G AAATT ACGAGACGGATCTTTT   CCTAGTTAGT CATGATTGGA AATATTTGTCA   ACAAAC AAA  GCTATAGTG CA    ATTTT CA     TTTTGGAACTAAA CAAGGCC 
  |||||||||||||||| ||          || ||||  ||||| |||||| |||||||||||||||||  | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||| ||||||||||||||||   |||||||||| |||||||||| |||||||||||   |||||| |||  ||||||||| ||    ||||| ||     ||||||||||||| ||||||| T
  TCCGGAACAAATCAAG GG          CG TTTT  AAAAA TCTAAG GGCAGTGTAGCTTAGAA  C GTGTACGTACTTTGTAATTTATATCTG  TTTGTTTTTGATTAATGTGTCAAATCG C TTTAG TGCTCTGCTTAGAAAA   GGATCAATCA GTACTAACTT TTATAAACAGT   TGTTTG TTT  CGATGTCAT GT    TGAAA GT     AAAGCCTTGATTT GTTCCGG 
AT                T  ----GACTTT  A    TC     T      A                 CA C                           CT                           A A     -                CTA          T          A           ATT      C   CA         -  CTTT     A  ---GA             T       A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End