SE2810733

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9738
  • Sorghum bicolor
  • SE2810733
  • Tc1/Mariner
  • St31
  • chromosome_2:71672201-71672448
  • TA
  • TACTACCTCTGTCCACAAAAGAATGCAATTCTAGGCGCATTCTTGGTTACACGTGTCTAAAGTTTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
    A                             G    T -  T     CAC      AA        CAAA  TA    T              AA   AGT      TGAAAAT     -   T  CA
TACT CCTCTGTCCACAAAAGAATGCAATTCTAG CGCA T CT GGTTA   GTGTCT  AGTTTGAC    TA  TATG AAAAATATTAATGT  ATA   ATAGTA       GTATC TCA GA  
|||| ||||||||||||||||||||||||||||| |||| | || |||||   ||||||  ||||||||    ||  |||| ||||||||||||||  |||   ||||||       ||||| ||| ||   
ATGA GGAGGCAGGTGTTTTCTTACGTTAAGATC GTGT A GG TCAAT   CATGGA  TCAAACTG    AT  ATAT TTTTTATAGTTATA  TAT   TATCGT       CATAG AGT CT  
    G                             -    T T  T     -TT      AC        ----  TC    T              AA   ---      --TTATT     T   -  CA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End